HL_4V5C_138

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5C_138 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1223

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V5C|1|CA|C|1314
4V5C|1|CA|U|1315
4V5C|1|CA|G|1316
4V5C|1|CA|C|1317
4V5C|1|CA|A|1318
4V5C|1|CA|A|1319
4V5C|1|CA|C|1320
4V5C|1|CA|C|1321
4V5C|1|CA|C|1322
4V5C|1|CA|G|1323

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CM

30S RIBOSOMAL PROTEIN S13

Chain CN

30S RIBOSOMAL PROTEIN S14

Chain CS

30S RIBOSOMAL PROTEIN S19