HL_4V5C_158
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5C_158 not in the Motif Atlas
- Homologous match to HL_7RQB_008
- Geometric discrepancy: 0.0666
- The information below is about HL_7RQB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67216.7
- Basepair signature
- cWW-tSH-F-F
- Number of instances in this motif group
- 9
Unit IDs
4V5C|1|DA|C|246
4V5C|1|DA|G|247
4V5C|1|DA|G|248
4V5C|1|DA|C|249
4V5C|1|DA|G|250
4V5C|1|DA|A|251
4V5C|1|DA|G|252
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain CW
- Transfer RNA; tRNA
- Chain D1
- 50S RIBOSOMAL PROTEIN L28
- Chain D8
- 50S RIBOSOMAL PROTEIN L35
- Chain DP
- 50S RIBOSOMAL PROTEIN L15
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