HL_4V5C_160
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUGGGAAG
- Length
- 8 nucleotides
- Bulged bases
- 4V5C|1|DA|A|311
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5C_160 not in the Motif Atlas
- Homologous match to HL_5J7L_142
- Geometric discrepancy: 0.1153
- The information below is about HL_5J7L_142
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_01609.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 18
Unit IDs
4V5C|1|DA|U|305
4V5C|1|DA|U|306
4V5C|1|DA|G|307
4V5C|1|DA|G|308
4V5C|1|DA|G|309
4V5C|1|DA|A|310
4V5C|1|DA|A|311
4V5C|1|DA|G|312
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain DY
- 50S RIBOSOMAL PROTEIN L24
Coloring options: