HL_4V5C_161

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAGAG

Length

5 nucleotides

Bulged bases

4V5C|1|DA|G|321, 4V5C|1|DA|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5C_161 not in the Motif Atlas

Homologous match to HL_5J7L_143

Geometric discrepancy: 0.1028

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V5C|1|DA|C|319
4V5C|1|DA|A|320
4V5C|1|DA|G|321
4V5C|1|DA|A|322
4V5C|1|DA|G|323

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DF

50S RIBOSOMAL PROTEIN L4