HL_4V5C_162

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4V5C|1|DA|G|329, 4V5C|1|DA|A|330, 4V5C|1|DA|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5C_162 not in the Motif Atlas

Geometric match to HL_4WF9_012

Geometric discrepancy: 0.1489

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4V5C|1|DA|G|327
4V5C|1|DA|U|328
4V5C|1|DA|G|329
4V5C|1|DA|A|330
4V5C|1|DA|A|331
4V5C|1|DA|A|332
4V5C|1|DA|G|333
4V5C|1|DA|C|334
4V5C|1|DA|C|335

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DY

50S RIBOSOMAL PROTEIN L24