HL_4V5C_171
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCGAACAGG
- Length
- 9 nucleotides
- Bulged bases
- 4V5C|1|DA|C|645
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5C_171 not in the Motif Atlas
- Geometric match to HL_5J7L_012
- Geometric discrepancy: 0.3221
- The information below is about HL_5J7L_012
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_81538.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
4V5C|1|DA|C|640
4V5C|1|DA|C|641
4V5C|1|DA|G|642
4V5C|1|DA|A|643
4V5C|1|DA|A|644
4V5C|1|DA|C|645
4V5C|1|DA|A|646
4V5C|1|DA|G|647
4V5C|1|DA|G|648
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D6
- 50S RIBOSOMAL PROTEIN L33
- Chain D8
- 50S RIBOSOMAL PROTEIN L35
- Chain DP
- 50S RIBOSOMAL PROTEIN L15
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