HL_4V5C_210
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGUCCACAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5C_210 not in the Motif Atlas
- Homologous match to HL_5J7L_193
- Geometric discrepancy: 0.2905
- The information below is about HL_5J7L_193
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_32735.2
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V5C|1|DA|C|2471
4V5C|1|DA|G|2472
4V5C|1|DA|U|2473
4V5C|1|DA|C|2474
4V5C|1|DA|C|2475
4V5C|1|DA|A|2476
4V5C|1|DA|C|2477
4V5C|1|DA|A|2478
4V5C|1|DA|G|2479
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain CY
- Transfer RNA; tRNA
- Chain D9
- 50S RIBOSOMAL PROTEIN L36
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