HL_4V5C_232

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCCGCGAAGACAGCCAGUCGAGUGGC

Length

26 nucleotides

Bulged bases

4V5C|1|BA|A|1045, 4V5C|1|BA|A|1046, 4V5C|1|BA|C|1052, 4V5C|1|BA|C|1053

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5C|1|BA|G|1039
4V5C|1|BA|C|1040
4V5C|1|BA|C|1041
4V5C|1|BA|G|1042
4V5C|1|BA|C|1043
4V5C|1|BA|G|1044
4V5C|1|BA|A|1045
4V5C|1|BA|A|1046
4V5C|1|BA|G|1047
4V5C|1|BA|A|1048
4V5C|1|BA|C|1049
4V5C|1|BA|A|1050
4V5C|1|BA|G|1051
4V5C|1|BA|C|1052
4V5C|1|BA|C|1053
4V5C|1|BA|A|1106
4V5C|1|BA|G|1107
4V5C|1|BA|U|1108
4V5C|1|BA|C|1109
4V5C|1|BA|G|1110
4V5C|1|BA|A|1111
4V5C|1|BA|G|1112
4V5C|1|BA|U|1113
4V5C|1|BA|G|1114
4V5C|1|BA|G|1115
4V5C|1|BA|C|1116

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BH

50S RIBOSOMAL PROTEIN L6

Chain BQ

50S RIBOSOMAL PROTEIN L16

Chain BZ

50S RIBOSOMAL PROTEIN L25