HL_4V5C_238

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCGGCAACGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5C_238 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3186

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V5C|1|CA|C|1263
4V5C|1|CA|C|1264
4V5C|1|CA|G|1265
4V5C|1|CA|G|1266
4V5C|1|CA|C|1267
4V5C|1|CA|A|1268
4V5C|1|CA|A|1269
4V5C|1|CA|C|1270
4V5C|1|CA|G|1271
4V5C|1|CA|G|1272

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CM

30S RIBOSOMAL PROTEIN S13

Chain CS

30S RIBOSOMAL PROTEIN S19

Chain CU

30S RIBOSOMAL PROTEIN THX