HL_4V5C_242

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGCUUGCG

Length

8 nucleotides

Bulged bases

4V5C|1|DA|U|157, 4V5C|1|DA|U|158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5C|1|DA|C|153
4V5C|1|DA|G|154
4V5C|1|DA|C|154|||A
4V5C|1|DA|U|157
4V5C|1|DA|U|158
4V5C|1|DA|G|171
4V5C|1|DA|C|172
4V5C|1|DA|G|173

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D1

50S RIBOSOMAL PROTEIN L28