HL_4V5D_009

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V5D|1|AA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_009 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.27

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

4V5D|1|AA|C|342
4V5D|1|AA|U|343
4V5D|1|AA|A|344
4V5D|1|AA|C|345
4V5D|1|AA|G|346
4V5D|1|AA|G|347

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain BO

50S RIBOSOMAL PROTEIN L14

Chain BT

50S RIBOSOMAL PROTEIN L19