HL_4V5D_025

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAGCGGUUCGGCCGG

Length

16 nucleotides

Bulged bases

4V5D|1|AA|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5D|1|AA|C|1128
4V5D|1|AA|C|1129
4V5D|1|AA|A|1130
4V5D|1|AA|G|1131
4V5D|1|AA|C|1132
4V5D|1|AA|G|1133
4V5D|1|AA|G|1134
4V5D|1|AA|U|1135
4V5D|1|AA|U|1136
4V5D|1|AA|C|1137
4V5D|1|AA|G|1138
4V5D|1|AA|G|1139
4V5D|1|AA|C|1140
4V5D|1|AA|C|1141
4V5D|1|AA|G|1142
4V5D|1|AA|G|1143

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S RIBOSOMAL PROTEIN S9