HL_4V5D_035

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

4V5D|1|AW|C|17, 4V5D|1|AW|G|18, 4V5D|1|AW|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_035 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.1893

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4V5D|1|AW|C|13
4V5D|1|AW|A|14
4V5D|1|AW|G|15
4V5D|1|AW|U|16
4V5D|1|AW|C|17
4V5D|1|AW|G|18
4V5D|1|AW|G|19
4V5D|1|AW|U|20
4V5D|1|AW|A|21
4V5D|1|AW|G|22

Current chains

Chain AW

E-SITE TRNA PHE

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA