HL_4V5D_040
3D structure
- PDB id
- 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 4V5D|1|AY|C|56, 4V5D|1|AY|G|57
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5D_040 not in the Motif Atlas
- Homologous match to HL_3TUP_003
- Geometric discrepancy: 0.3007
- The information below is about HL_3TUP_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
4V5D|1|AY|G|53
4V5D|1|AY|U|54
4V5D|1|AY|U|55
4V5D|1|AY|C|56
4V5D|1|AY|G|57
4V5D|1|AY|A|58
4V5D|1|AY|U|59
4V5D|1|AY|U|60
4V5D|1|AY|C|61
Current chains
- Chain AY
- P AND A-SITE PHE-TRNA PHE
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- 50S RIBOSOMAL PROTEIN L16
- Chain BZ
- 50S RIBOSOMAL PROTEIN L25
Coloring options: