HL_4V5D_066

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

4V5D|1|BA|A|887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_066 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.5747

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

4V5D|1|BA|C|884
4V5D|1|BA|C|885
4V5D|1|BA|C|886
4V5D|1|BA|A|887
4V5D|1|BA|C|888
4V5D|1|BA|C|889
4V5D|1|BA|A|890
4V5D|1|BA|G|892

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AM

30S RIBOSOMAL PROTEIN S13

Chain AS

30S RIBOSOMAL PROTEIN S19