HL_4V5D_069

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGCGAAGACAGCCAGUCGAGUG

Length

22 nucleotides

Bulged bases

4V5D|1|BA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5D|1|BA|C|1041
4V5D|1|BA|G|1042
4V5D|1|BA|C|1043
4V5D|1|BA|G|1044
4V5D|1|BA|A|1045
4V5D|1|BA|A|1046
4V5D|1|BA|G|1047
4V5D|1|BA|A|1048
4V5D|1|BA|C|1049
4V5D|1|BA|A|1050
4V5D|1|BA|G|1051
4V5D|1|BA|C|1052
4V5D|1|BA|C|1053
4V5D|1|BA|A|1106
4V5D|1|BA|G|1107
4V5D|1|BA|U|1108
4V5D|1|BA|C|1109
4V5D|1|BA|G|1110
4V5D|1|BA|A|1111
4V5D|1|BA|G|1112
4V5D|1|BA|U|1113
4V5D|1|BA|G|1114

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BH

50S RIBOSOMAL PROTEIN L6

Chain BZ

50S RIBOSOMAL PROTEIN L25