HL_4V5D_071

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_071 not in the Motif Atlas

Homologous match to HL_7RQB_032

Geometric discrepancy: 0.1171

The information below is about HL_7RQB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V5D|1|BA|C|1222
4V5D|1|BA|G|1223
4V5D|1|BA|C|1224
4V5D|1|BA|G|1225
4V5D|1|BA|A|1226
4V5D|1|BA|G|1227

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BU

50S RIBOSOMAL PROTEIN L20

Chain BV

50S RIBOSOMAL PROTEIN L21