HL_4V5D_083

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGAUGAGC

Length

9 nucleotides

Bulged bases

4V5D|1|BA|A|1722, 4V5D|1|BA|U|1739, 4V5D|1|BA|G|1740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_083 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2126

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V5D|1|BA|G|1719
4V5D|1|BA|U|1720
4V5D|1|BA|G|1721
4V5D|1|BA|A|1722
4V5D|1|BA|U|1739
4V5D|1|BA|G|1740
4V5D|1|BA|A|1741
4V5D|1|BA|G|1742
4V5D|1|BA|C|1743

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains