HL_4V5D_087

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGCAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_087 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.361

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V5D|1|BA|G|1863
4V5D|1|BA|U|1864
4V5D|1|BA|G|1865
4V5D|1|BA|C|1866
4V5D|1|BA|A|1876
4V5D|1|BA|A|1877
4V5D|1|BA|G|1878
4V5D|1|BA|C|1879

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains