HL_4V5D_134

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_134 not in the Motif Atlas

Homologous match to HL_4LFB_024

Geometric discrepancy: 0.1016

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V5D|1|CA|C|1076
4V5D|1|CA|G|1077
4V5D|1|CA|U|1078
4V5D|1|CA|G|1079
4V5D|1|CA|A|1080
4V5D|1|CA|G|1081

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CB

30S RIBOSOMAL PROTEIN S2

Chain CE

30S RIBOSOMAL PROTEIN S5