HL_4V5D_164

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

4V5D|1|DA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_164 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0905

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5D|1|DA|G|382
4V5D|1|DA|U|383
4V5D|1|DA|U|384
4V5D|1|DA|C|385
4V5D|1|DA|G|386
4V5D|1|DA|U|387
4V5D|1|DA|G|388
4V5D|1|DA|G|389
4V5D|1|DA|A|390
4V5D|1|DA|G|391
4V5D|1|DA|C|392

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D1

50S RIBOSOMAL PROTEIN L28

Chain DP

50S RIBOSOMAL PROTEIN L15