HL_4V5D_176

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

4V5D|1|DA|U|827, 4V5D|1|DA|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_176 not in the Motif Atlas

Homologous match to HL_4WF9_025

Geometric discrepancy: 0.1391

The information below is about HL_4WF9_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

4V5D|1|DA|U|826
4V5D|1|DA|U|827
4V5D|1|DA|U|828
4V5D|1|DA|A|829
4V5D|1|DA|G|830
4V5D|1|DA|G|831

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DP

50S RIBOSOMAL PROTEIN L15