HL_4V5D_211

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_211 not in the Motif Atlas

Homologous match to HL_7RQB_060

Geometric discrepancy: 0.2754

The information below is about HL_7RQB_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4V5D|1|DA|C|2471
4V5D|1|DA|G|2472
4V5D|1|DA|U|2473
4V5D|1|DA|C|2474
4V5D|1|DA|C|2475
4V5D|1|DA|A|2476
4V5D|1|DA|C|2477
4V5D|1|DA|A|2478
4V5D|1|DA|G|2479

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CY

Transfer RNA; tRNA

Chain D9

50S RIBOSOMAL PROTEIN L36

Chain DQ

50S RIBOSOMAL PROTEIN L16