HL_4V5D_223

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGGGGAAACUCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5D|1|AA|C|155
4V5D|1|AA|G|156
4V5D|1|AA|G|157
4V5D|1|AA|G|158
4V5D|1|AA|G|159
4V5D|1|AA|A|160
4V5D|1|AA|A|161
4V5D|1|AA|A|162
4V5D|1|AA|C|163
4V5D|1|AA|U|164
4V5D|1|AA|C|165
4V5D|1|AA|G|166

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20

Chain BT

50S RIBOSOMAL PROTEIN L19