HL_4V5D_234

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGCAAG

Length

6 nucleotides

Bulged bases

4V5D|1|BA|C|1866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_234 not in the Motif Atlas

Homologous match to HL_9DFE_045

Geometric discrepancy: 0.2702

The information below is about HL_9DFE_045

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V5D|1|BA|U|1864
4V5D|1|BA|G|1865
4V5D|1|BA|C|1866
4V5D|1|BA|A|1876
4V5D|1|BA|A|1877
4V5D|1|BA|G|1878

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains