HL_4V5D_239

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUGAAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_239 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3394

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V5D|1|CA|G|1010
4V5D|1|CA|G|1011
4V5D|1|CA|U|1012
4V5D|1|CA|G|1013
4V5D|1|CA|A|1014
4V5D|1|CA|A|1015
4V5D|1|CA|A|1016
4V5D|1|CA|G|1017
4V5D|1|CA|C|1018
4V5D|1|CA|C|1019

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CN

30S RIBOSOMAL PROTEIN S14

Chain CS

30S RIBOSOMAL PROTEIN S19