HL_4V5D_248

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

4V5D|1|DA|G|2307, 4V5D|1|DA|A|2310

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5D|1|DA|G|2302
4V5D|1|DA|G|2303
4V5D|1|DA|G|2304
4V5D|1|DA|A|2305
4V5D|1|DA|C|2306
4V5D|1|DA|G|2307
4V5D|1|DA|G|2308
4V5D|1|DA|A|2309
4V5D|1|DA|A|2310
4V5D|1|DA|A|2311
4V5D|1|DA|U|2312
4V5D|1|DA|C|2313
4V5D|1|DA|C|2314

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CV

Transfer RNA; tRNA

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S RIBOSOMAL PROTEIN L5