3D structure

PDB id
4V5E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Insights into translational termination from the structure of RF2 bound to the ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.45 Å

Loop

Sequence
CUACGG
Length
6 nucleotides
Bulged bases
4V5E|1|CA|A|1447
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V5E_140 not in the Motif Atlas
Geometric match to HL_5J7L_025
Geometric discrepancy: 0.3468
The information below is about HL_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_87954.2
Basepair signature
cWW-tSW-F
Number of instances in this motif group
7

Unit IDs

4V5E|1|CA|C|1445
4V5E|1|CA|U|1446
4V5E|1|CA|A|1447
4V5E|1|CA|C|1452
4V5E|1|CA|G|1456
4V5E|1|CA|G|1457

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CT
30S RIBOSOMAL PROTEIN S20

Coloring options:


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