3D structure

PDB id
4V5E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Insights into translational termination from the structure of RF2 bound to the ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.45 Å

Loop

Sequence
CAGUCGGUAG
Length
10 nucleotides
Bulged bases
4V5E|1|CW|U|16, 4V5E|1|CW|C|17, 4V5E|1|CW|G|18, 4V5E|1|CW|G|19, 4V5E|1|CW|U|20, 4V5E|1|CW|A|21
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V5E_145 not in the Motif Atlas
Homologous match to HL_3KFU_004
Geometric discrepancy: 0.3266
The information below is about HL_3KFU_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5E|1|CW|C|13
4V5E|1|CW|A|14
4V5E|1|CW|G|15
4V5E|1|CW|U|16
4V5E|1|CW|C|17
4V5E|1|CW|G|18
4V5E|1|CW|G|19
4V5E|1|CW|U|20
4V5E|1|CW|A|21
4V5E|1|CW|G|22

Current chains

Chain CW
E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)

Nearby chains

Chain DA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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