HL_4V5E_176

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5E_176 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.0915

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4V5E|1|DA|G|978
4V5E|1|DA|G|979
4V5E|1|DA|A|980
4V5E|1|DA|A|981
4V5E|1|DA|C|982
4V5E|1|DA|A|983
4V5E|1|DA|A|984
4V5E|1|DA|C|985

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D3

50S RIBOSOMAL PROTEIN L30

Chain DU

50S RIBOSOMAL PROTEIN L20