HL_4V5F_144
3D structure
- PDB id
- 4V5F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the ribosome with elongation factor G trapped in the post-translocational state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- G(5MU)UCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- 4V5F|1|CV|U|55
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5F_144 not in the Motif Atlas
- Homologous match to HL_6UGG_006
- Geometric discrepancy: 0.1223
- The information below is about HL_6UGG_006
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
4V5F|1|CV|G|53
4V5F|1|CV|5MU|54
4V5F|1|CV|U|55
4V5F|1|CV|C|56
4V5F|1|CV|A|57
4V5F|1|CV|A|58
4V5F|1|CV|A|59
4V5F|1|CV|U|60
4V5F|1|CV|C|61
Current chains
- Chain CV
- E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54)
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DG
- 50S RIBOSOMAL PROTEIN L5
- Chain DQ
- 50S RIBOSOMAL PROTEIN L16
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