HL_4V5F_146
3D structure
- PDB id
- 4V5F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the ribosome with elongation factor G trapped in the post-translocational state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5F_146 not in the Motif Atlas
- Homologous match to HL_4WT8_216
- Geometric discrepancy: 0.221
- The information below is about HL_4WT8_216
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4V5F|1|CW|G|32
4V5F|1|CW|C|33
4V5F|1|CW|U|34
4V5F|1|CW|C|35
4V5F|1|CW|A|36
4V5F|1|CW|U|37
4V5F|1|CW|A|38
4V5F|1|CW|A|39
4V5F|1|CW|C|40
Current chains
- Chain CW
- E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54)
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CG
- 30S RIBOSOMAL PROTEIN S7
- Chain CK
- 30S RIBOSOMAL PROTEIN S11
- Chain CV
- Transfer RNA; tRNA
- Chain CX
- MRNA
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