HL_4V5F_176

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGGAACAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5F_176 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3254

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V5F|1|DA|G|977
4V5F|1|DA|G|978
4V5F|1|DA|G|979
4V5F|1|DA|A|980
4V5F|1|DA|A|981
4V5F|1|DA|C|982
4V5F|1|DA|A|983
4V5F|1|DA|A|984
4V5F|1|DA|C|985
4V5F|1|DA|C|986

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D3

50S RIBOSOMAL PROTEIN L30

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DU

50S RIBOSOMAL PROTEIN L20