HL_4V5F_185

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

4V5F|1|DA|U|1453, 4V5F|1|DA|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5F_185 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.4511

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_93135.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4V5F|1|DA|C|1450|||A
4V5F|1|DA|C|1451
4V5F|1|DA|A|1452
4V5F|1|DA|U|1453
4V5F|1|DA|G|1455
4V5F|1|DA|G|1456
4V5F|1|DA|A|1457
4V5F|1|DA|C|1458
4V5F|1|DA|G|1459
4V5F|1|DA|A|1460
4V5F|1|DA|G|1461

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DR

50S RIBOSOMAL PROTEIN L17