HL_4V5F_213

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5F_213 not in the Motif Atlas

Geometric match to HL_5B2P_001

Geometric discrepancy: 0.1221

The information below is about HL_5B2P_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V5F|1|DA|C|2658
4V5F|1|DA|G|2659
4V5F|1|DA|A|2660
4V5F|1|DA|G|2661
4V5F|1|DA|A|2662
4V5F|1|DA|G|2663

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CY

ELONGATION FACTOR G

Chain DH

50S RIBOSOMAL PROTEIN L6