HL_4V5G_038

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UCAG(H2U)(H2U)GG(H2U)AGA

Length

12 nucleotides

Bulged bases

4V5G|1|AY|G|18, 4V5G|1|AY|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5G_038 not in the Motif Atlas

Homologous match to HL_5E6M_001

Geometric discrepancy: 0.4824

The information below is about HL_5E6M_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99769.3

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V5G|1|AY|U|12
4V5G|1|AY|C|13
4V5G|1|AY|A|14
4V5G|1|AY|G|15
4V5G|1|AY|H2U|16
4V5G|1|AY|H2U|17
4V5G|1|AY|G|18
4V5G|1|AY|G|19
4V5G|1|AY|H2U|20
4V5G|1|AY|A|21
4V5G|1|AY|G|22
4V5G|1|AY|A|23

Current chains

Chain AY

A-SITE TRNA THR

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain BA

Large subunit ribosomal RNA; LSU rRNA