HL_4V5G_039
3D structure
- PDB id
- 4V5G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the 70S ribosome bound to EF-Tu and tRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CUUGGU(YG)AG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: YG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5G_039 not in the Motif Atlas
- Homologous match to HL_6GSK_203
- Geometric discrepancy: 0.1409
- The information below is about HL_6GSK_203
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4V5G|1|AY|C|31
4V5G|1|AY|U|32
4V5G|1|AY|U|33
4V5G|1|AY|G|34
4V5G|1|AY|G|35
4V5G|1|AY|U|36
4V5G|1|AY|YG|37
4V5G|1|AY|A|38
4V5G|1|AY|G|39
Current chains
- Chain AY
- A-SITE TRNA THR
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AL
- 30S RIBOSOMAL PROTEIN S12
- Chain AM
- 30S RIBOSOMAL PROTEIN S13
- Chain AX
- MRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: