HL_4V5G_115

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCCUUGGG

Length

8 nucleotides

Bulged bases

4V5G|1|CA|U|189|||F, 4V5G|1|CA|G|189|||G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5G_115 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3596

The information below is about HL_5J7L_200

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5G|1|CA|C|189|||B
4V5G|1|CA|C|189|||C
4V5G|1|CA|C|189|||D
4V5G|1|CA|U|189|||E
4V5G|1|CA|U|189|||F
4V5G|1|CA|G|189|||G
4V5G|1|CA|G|189|||H
4V5G|1|CA|G|189|||I

Current chains

Chain CA

16S RIBOSOMAL RNA

Nearby chains

Chain CQ

30S RIBOSOMAL PROTEIN S17