HL_4V5G_172

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCGAACAGG

Length

9 nucleotides

Bulged bases

4V5G|1|DA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5G_172 not in the Motif Atlas

Geometric match to HL_5J7L_012

Geometric discrepancy: 0.3167

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V5G|1|DA|C|640
4V5G|1|DA|C|641
4V5G|1|DA|G|642
4V5G|1|DA|A|643
4V5G|1|DA|A|644
4V5G|1|DA|C|645
4V5G|1|DA|A|646
4V5G|1|DA|G|647
4V5G|1|DA|G|648

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D6

50S RIBOSOMAL PROTEIN L33

Chain D8

50S RIBOSOMAL PROTEIN L35

Chain DP

50S RIBOSOMAL PROTEIN L15