HL_4V5G_218

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGCGUCAAGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5G_218 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.2222

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V5G|1|DA|G|2792
4V5G|1|DA|G|2793
4V5G|1|DA|C|2794
4V5G|1|DA|G|2795
4V5G|1|DA|U|2796
4V5G|1|DA|C|2799
4V5G|1|DA|A|2801
4V5G|1|DA|A|2801|||A
4V5G|1|DA|G|2802
4V5G|1|DA|C|2803
4V5G|1|DA|C|2804

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains