HL_4V5G_228

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCUAACGC

Length

8 nucleotides

Bulged bases

4V5G|1|AA|U|863

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5G_228 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3376

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

4V5G|1|AA|G|861
4V5G|1|AA|C|862
4V5G|1|AA|U|863
4V5G|1|AA|A|864
4V5G|1|AA|A|865
4V5G|1|AA|C|866
4V5G|1|AA|G|867
4V5G|1|AA|C|868

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AE

30S RIBOSOMAL PROTEIN S5

Chain AH

30S RIBOSOMAL PROTEIN S8