HL_4V5G_255

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4V5G|1|DA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5G_255 not in the Motif Atlas

Homologous match to HL_9DFE_019

Geometric discrepancy: 0.4533

The information below is about HL_9DFE_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V5G|1|DA|C|641
4V5G|1|DA|G|642
4V5G|1|DA|A|643
4V5G|1|DA|A|644
4V5G|1|DA|C|645
4V5G|1|DA|A|646
4V5G|1|DA|G|647

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D6

50S RIBOSOMAL PROTEIN L33

Chain D8

50S RIBOSOMAL PROTEIN L35

Chain DP

50S RIBOSOMAL PROTEIN L15