HL_4V5G_263

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCUCCGGG

Length

8 nucleotides

Bulged bases

4V5G|1|DA|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5G_263 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.1981

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V5G|1|DA|C|2142
4V5G|1|DA|C|2143
4V5G|1|DA|U|2144
4V5G|1|DA|C|2145
4V5G|1|DA|C|2146
4V5G|1|DA|G|2147
4V5G|1|DA|G|2148
4V5G|1|DA|G|2149

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CK

30S RIBOSOMAL PROTEIN S11