HL_4V5G_273

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4V5G|1|BA|U|1396, 4V5G|1|BA|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5G_273 not in the Motif Atlas

Homologous match to HL_9DFE_034

Geometric discrepancy: 0.2276

The information below is about HL_9DFE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V5G|1|BA|G|1389
4V5G|1|BA|U|1390
4V5G|1|BA|U|1391
4V5G|1|BA|A|1392
4V5G|1|BA|A|1393
4V5G|1|BA|U|1394
4V5G|1|BA|A|1395
4V5G|1|BA|U|1396
4V5G|1|BA|U|1397
4V5G|1|BA|C|1398

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BX

50S RIBOSOMAL PROTEIN L23