HL_4V5J_008

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5J_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.08

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V5J|1|AA|C|320
4V5J|1|AA|A|321
4V5J|1|AA|C|322
4V5J|1|AA|U|323
4V5J|1|AA|G|324
4V5J|1|AA|A|325
4V5J|1|AA|G|326
4V5J|1|AA|A|327
4V5J|1|AA|C|328
4V5J|1|AA|A|329
4V5J|1|AA|C|330
4V5J|1|AA|G|331
4V5J|1|AA|G|332
4V5J|1|AA|G|333

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain AT

30S RIBOSOMAL PROTEIN S20