HL_4V5J_034
3D structure
- PDB id
- 4V5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5J_034 not in the Motif Atlas
- Homologous match to HL_5WWT_002
- Geometric discrepancy: 0.1568
- The information below is about HL_5WWT_002
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
4V5J|1|AV|G|53
4V5J|1|AV|U|54
4V5J|1|AV|U|55
4V5J|1|AV|C|56
4V5J|1|AV|G|57
4V5J|1|AV|A|58
4V5J|1|AV|U|59
4V5J|1|AV|U|60
4V5J|1|AV|C|61
Current chains
- Chain AV
- E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- 50S RIBOSOMAL PROTEIN L5
- Chain BQ
- 50S RIBOSOMAL PROTEIN L16
Coloring options: