HL_4V5J_098

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5J_098 not in the Motif Atlas

Homologous match to HL_7RQB_060

Geometric discrepancy: 0.2883

The information below is about HL_7RQB_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4V5J|1|BA|C|2471
4V5J|1|BA|G|2472
4V5J|1|BA|U|2473
4V5J|1|BA|C|2474
4V5J|1|BA|C|2475
4V5J|1|BA|A|2476
4V5J|1|BA|C|2477
4V5J|1|BA|A|2478
4V5J|1|BA|G|2479

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AY

PEPTIDE CHAIN RELEASE FACTOR 2

Chain B9

50S RIBOSOMAL PROTEIN L36

Chain BQ

50S RIBOSOMAL PROTEIN L16