HL_4V5J_102

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

4V5J|1|BA|A|2660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5J_102 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.2675

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V5J|1|BA|C|2658
4V5J|1|BA|G|2659
4V5J|1|BA|A|2660
4V5J|1|BA|G|2661
4V5J|1|BA|A|2662
4V5J|1|BA|G|2663

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BH

50S RIBOSOMAL PROTEIN L6