HL_4V5J_131

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUGAAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5J_131 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.36

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V5J|1|CA|G|1010
4V5J|1|CA|G|1011
4V5J|1|CA|U|1012
4V5J|1|CA|G|1013
4V5J|1|CA|A|1014
4V5J|1|CA|A|1015
4V5J|1|CA|A|1016
4V5J|1|CA|G|1017
4V5J|1|CA|C|1018
4V5J|1|CA|C|1019

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain CS

30S RIBOSOMAL PROTEIN S19