HL_4V5J_142
3D structure
- PDB id
- 4V5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5J_142 not in the Motif Atlas
- Homologous match to HL_6UFG_007
- Geometric discrepancy: 0.1546
- The information below is about HL_6UFG_007
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
4V5J|1|CV|A|31
4V5J|1|CV|U|32
4V5J|1|CV|U|33
4V5J|1|CV|G|34
4V5J|1|CV|A|35
4V5J|1|CV|A|36
4V5J|1|CV|A|37
4V5J|1|CV|A|38
4V5J|1|CV|U|39
Current chains
- Chain CV
- E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CI
- 30S RIBOSOMAL PROTEIN S9
- Chain CM
- 30S RIBOSOMAL PROTEIN S13
- Chain CW
- Transfer RNA; tRNA
- Chain CX
- MRNA
- Chain CY
- PEPTIDE CHAIN RELEASE FACTOR 2
Coloring options: